Similarity Venn Diagram

We proposed a novel representation for including similarity metrics in conventional Venn Diagrams. Applied in the context of Gene Ontology Biological Processes (GO-BP), the following archive contains the Java source code and GO-GO similarity matrix used in the paper under review for JBI (http://lussierlab.org/publications/Ex-vivo-ViralAssay).

The archive contains three example lists of GO-BP terms as well as the output counts computed with the Java code and further displayed in the Similarity Venn Diagram. It should be noted that the code does not compute the Venn Diagram representation automatically, it only computes the counts corresponding to a given similarity cutoff (0.7 by default). The representation should be done manually.

Source code and resources:
SimilarityVenn.zip