Similarity Venn Diagram
We proposed a novel
representation for including similarity metrics in conventional Venn Diagrams.
Applied in the context of Gene Ontology Biological Processes (GO-BP), the
following archive contains the Java source code and GO-GO similarity matrix
used in the paper under review for JBI (http://lussierlab.org/publications/Ex-vivo-ViralAssay).
The archive contains three
example lists of GO-BP terms as well as the output counts computed with the
Java code and further displayed in the Similarity Venn Diagram. It should be noted that the code does not compute
the Venn Diagram representation automatically, it only
computes the counts corresponding to a given similarity cutoff (0.7 by
default). The representation should be done manually.
Source
code and resources:
SimilarityVenn.zip