Publications and Communications of Research Group of Yves A. Lussier Funded in part by the National Library of Medicine Medical Informatics Training Grant 1K22 LM008308
1
Tao Y, Friedman
C, Lussier YA*. The Use of Information
Visualization Techniques in Bioinformatics during the Postgenomic Era. Biosilico 2004; Vol. 2, No. 6. [Cited by
21]http://dx.doi.org/doi:10.1016/S1741-8364(04)02423-0
2
Tao Y, Friedman C*, Lussier YA*. "Visualizing information
across multidimensional post-genomic structured and textual databases" Bioinformatics. 2005 Apr
15;21(8):1659-67. Epub 2004 Dec 14. [Cited
by 11] http://dx.doi.org/doi:10.1093/bioinformatics/bti210
3
Choi J, Bakken S*, Lussier YA*, Mendonca EA*. Improving
the Human Readability of Arden Syntax Medical Logic Modules Using a
Concept-oriented Terminology and Object-oriented Programming Expressions. Comput Inform Nurs. 2006 Jul-Aug;
24(4):220-5.
4
Tulipano KP, Tao Y, Zanzonico P,
Kolbert K, Millar WS, Xu H, Yu H, Chen L, Lussier
YA*, Friedman C*. Natural Language Processing and Visualization in the
Molecular Imaging Domain. Journal of
Biomedical Informatics, 40 2007; 270-281.
5
Friedman C*, Borlawsky T, Xing HR, Lussier YA*. Bio-Ontology and Text:
Bridging the Modeling Gap. Bioinformatics,
2006 Oct 1;22(19):2421-9.
6
Liu Y, Li J, Sam L, Goh CS, Gerstein
M*, Lussier YA*. From phenotypes to
genotypes: A meta-genomic approach to uncover the molecular mechanisms of
prokaryotic traits. PLoS Computational
Biology, 2006 2(11): 1419-1435. [Cited
by 26]
·
Editor's Pick of the month
·
Selected as Highlights of 2007 (30
mansucripts selected in ) for presentation in the International Symposium on
Molecular Biology (ISMB 2007).
7
Chen JL, Sam L, Tao Y, Liu Y, Lussier YA*. High-throughput functional
classification of human disease genes. BMC Bioinformatics 2007, 8(Suppl
3):S7
8
Lussier
YA*, Liu Y. Computational Approaches to Phenotyping:
High-Throughput Phenomics. Proc Am Thorac
Soc Vol 4. pp 18-25, 2007. [Cited
by 20]
9
Tao Y, Li J, Friedman C*, Lussier YA*. Information Theory
Applied to the Sparse Gene Ontology Annotation Network to Predict Novel Gene
Function. Bioinformatics, 2007,
23(13)i529-38.[Cited by 33]
10
Bales M, Lussier YA*, Johnson SB*. Topological analysis of large-scale
biomedical terminology structure. J Am Med Inform Assoc. epub 2007 Aug
2, 2007 Nov每Dec; 14(6): 788每797.
http://www.pubmedcentral.nih.gov/picrender.fcgi?tool=pmcentrez&artid=2213477&blobtype=pdf
11 Liu
Y, Sam L, Li J, Lussier YA*. Robust
Methods for Accurate Diagnosis Using Pan-Microbiological Oligonucleotide
Microarrays. BMC Bioinformatics,.
2009 Feb 5;10 Suppl 2:S11.
·
Outstanding Paper Award from the American Medical Informatics Association.
12 Sam
L. Li J, Mendonca E, Friedman C, Lussier
YA*. PhenoGO: A Resource for Mining Multiscale Biological and Clinical Data.
BMC Bioinformatics.. 2009 Feb 5;10
Suppl 2:S8.
·
Outstanding Paper Award from the American Medical Informatics
Association.
13
Pantazatos SP, Li J, Pavlidis P, Lussier YA*. Integration of Neuroimaging and Microarray Datasets through
Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes. Cancer Informatics, 2009:8 75每94. http://la-press.com/article.php?article_id=1484
·
Highly visible (1153 readers in 6 months).
14 Yang
X, Huang Y, Chen J, Xie J, Sun X, Lussier
YA*. Mechanism-Anchored Profiling derived from Epigenetic Networks Predicts
Outcome in Acute Lymphoblastic Leukemia. BMC
Bioinformatics 2009, 10(Suppl 9):S6 (17 September 2009).
·
Outstanding Paper Award
from the American Medical Informatics Association.
15
Yang X, Lee Y, Fan H, Sun X*, Lussier YA*. Identification of common microRNA-mRNA regulatory
biomodules in human epithelial cancers. Chinese
Science Bulletin, in press http://www.springerlink.com/content/1001-6538/
http://phenos.bsd.uchicago.edu/publication/biomodule/microRNA_revised_resubmit_June262009.pdf
16 Yang
X§, Lee Y§, Huang Y, Chen J, Xing HR* , Lussier YA*.Stromal Microenvironment
Processes Unveiled by Biological Component Analysis of Gene Expression in
Xenograft Tumor Models. In press, BMC
Bioinformatics.
·
"Selected for publication in BMC
Bioinformatics as part of a special relationship between AMIA and BMC to
recognize twelve exceptional 2010 TBI Summit papers."
17 Lee
Y§, Yang X§, Huang Y§, Fan H§, Zhang Q, Wu Y, Li J, Hasina R, Cheng C, Lingen
M, Gerstein M, Weichselbaum R, Xing HR*,
Lussier YA*. MiR-204 suppresses tumor invasion by regulating molecular
networks of cell adhesion and extracellular matrix remodelling. In press, PLoS
Computational Biology.In press, PLOS
Computational Biology.
·
One of the 24 best translational
bioinformatics reports of 2009-10, by Russ Altman, in his review
presented at the 2010 American
Medical Informatics Association Summit on Translational Bioinformatics and on
his blog http://rbaltman.wordpress.com/
(page 36 of the PDF file, URL below):
http://go2.wordpress.com/?id=725X1342&site=rbaltman.wordpress.com&url=http%3A%2F%2Ffiles.me.com%2Frussbaltman%2F71b0xt
·
Selected as late breaking news (5 selected) for highlight in The 2010 American Medical
Informatics Association Summit on Translational Bioinformatics; S12, p.17
(program below).
18 Chen
J§, Sam L§, Huang Y§, Lee Y, Li J, Liu Y, Xing HR, Lussier YA*. Protein Interaction Network Underpins Concordant
Prognosis Among Heterogeneous Breast Cancer Signatures. in press, Journal of Biomedical Informatics.
19
Cantor MN, Lussier YA*. Putting Data Integration into Practice:
Using Biomedical Terminologies to Add Structure to Existing Data Sources. AMIA Annu Symp Proc.2003:125-9. [Cited
by 24]
20
Lussier
YA*, Li J. Terminological Mapping For High Throughput Comparative
Biology of Phenotypes. Pac Symp Biocomput.
2004;:202-13. [Cited
by 22]
21
Tao Y, Mendonca EA, Lussier YA*. "A tool for Abstracting
Relevant Classes of Concepts: the Common Ancestry Summarizer". Medinfo. 2004;11(Pt 1):449-53.
22
Cantor MN, Lussier YA*. "Mining OMIM for Insight in Complex Diseases". Medinfo. 2004;11(Pt 2):753-7. [Cited
by 16]
23
Cantor MN, Sarkar IN, Bodenreider O, Lussier YA*. Genestrace: Phenomic Knowledge
Discovery Via Structured Terminology. Pac
Symp Biocomput. 2005;:103-14. [Cited
by 15]
24
Lussier
YA*, Borlawsky T, Rappaport D, Friedman C*. PhenoGO: a
Multistrategy Language Processing System Assigning Phenotypic Context to Gene
Ontology Annotations. Pac Symp Biocomput.,
2006;:64-75. [Cited
by 35]
25
Borlawsky T, Friedman C, Lussier YA*. Generating Executable
Knowledge for Evidence-Based Medicine Using Natural Language and Semantic
Processing. AMIA Annu Symp Proc.
2006, pp.56-60. [Cited
by 3]
26
Pantazatos SP; Li J; Pavlidis P; van
Horn JD, Lussier YA*. Cross-Scale Mapping of Gene
Expression to Neuroimaging Datasets via Semantic Decomposition. Medinfo 2007:
Proceedings of the 12th World Congress on Health (Medical) Informatics;
Building Sustainable Health Systems; pages: [2282]-[2284]. [Cited
by 1]
27
Sam L, Li J, Liu Y, Friedman C*, Lussier YA*. Discovery of Protein
Interaction Networks Shared by Diseases. . Pac Symp Biocomput,
12:76-87(2007). [Cited
by 11]
28
Chen ES, Stetson PD, Lussier YA, Markatou M, Hripcsak G,
Friedman C. Detection of Practice Pattern Trends through Natural Language
Processing of Clinical Narratives and Biomedical Literature. AMIA Annu Symp Proc. 2007 Oct 11:120-4.
29
Tao Y, Patel C, Friedman C, Lussier YA*. PIE: A Phenotype Interface Engine for Automated
Representation in PATO and "Semantic Web"-Based Exchange of Clinical Data and
Narratives. AMIA Annu Symp Proc. AMIA Annu Symp Proc. 2007 Oct 11:p.645-
30 Lee
Y, Li J, Gamazon E, Tikhomirov A, Cox NJ*, Lussier
YA*. Biomolecular Systems of Disease Buried Across Multiple GWAS Unveiled
by Information Theory and Ontology.
Proceedings of the 2010 AMIA Summit on Translational Bioinformatics.
31 Borlawsky-Payne
T, Li J, Friedman C*, Lussier YA*,.
BiomedLEE: High Throughput Encoding of Genes and Phenotypes from Biomedical
Narratives Based on Natural Language Processing. Proceedings of the 2010 AMIA
Summit on Translational Bioinformatics.
32 Yang
X§, Lee Y§, Huang Y, Chen J, Xing HR* , Lussier
YA*.Stromal Microenvironment Processes Unveiled by Biological Component
Analysis of Gene Expression in Xenograft Tumor Models. Proceedings of the 2010
AMIA Summit on Translational Bioinformatics,
·
accepted for publication in BMC Bioinformatics among top 12
mansucripts of the conference.
33
Côté RA; Lussier YA:
"Glossary of signs and symptoms". American College of Pathology,
Secretariat of the Systematized Nomenclature of Veterinary and Human Medicine. SNOMED vers 3.2, (CD), 1995.
34 Lussier
YA§,
Jenders R§, Mendonça EA§: "Clinical
Decision Support Systems." Healthcare Information Systems, 2nd
Ed. Best Practices Series, Auerbach,
Beaver K ed. Chapter 17, 2003:221-36.
Kukafka
R, Lussier YA, Cimino JJ. Chapter#
19 "The MI-HEART Project" p.227-238 in
"Social Informatics and Consumer Health: Opportunities and
Issues" in Lewis, D., Eysenbach, G., Kukafka, R., Stavri, Z., and Jimison,
H. Consumer Health Informatics. Springer-Verlag, New York. 246p. pp.227-238
(2005). http://www.springerlink.com/content/hl64488467x32612/fulltext.pdf
http://books.google.com/books?id=y6S_K7U_3w8C&pg=PR18&lpg=PR18&dq=%22The+MI-HEART+Project%22+kukafka+cimino+jimison&source=web&ots=MOhTSx7tr4&sig=vH3o8gQyunoKrLaz19Srs44yWyw&hl=en&sa=X&oi=book_result&resnum=3&ct=result
35
Lussier YA*: Chapter 99 on "Ontologies and
Natural Language Processing". Russ
Altman, Shankar Subramaniam. Volume 4: Bioinformatics. Encyclopaedia of
Genetics, Genomics, Proteomics and Bioinformatics, John Wiley & Sons,
(2005 pp. 1-17 specialist review).
36 Stevens
R*, Bodenreider O*, Lussier YA*.
Semantic webs for life sciences. Pac Symp
Biocomput. 2006;:112-5. http://helix-web.stanford.edu/psb06/intro-sem.pdf
37 Lussier YA*, Shortliffe EH: Chapter 22 (Final Chapter):
IT-Related Grand Challenges in Medicine and Health".pp.441-452 Harold P Lehmann, Patricia A Abbott, Nancy R Roderer, Adam
Rothchild, Steven Mandell, Jorge A Ferrer, Robert E Miller, Marion J Ball,
Editors, "Aspects of the Computer Patient Record", 2nd Ed. Springer-Verlag,
2006 483p.
38 Lussier YA*, Bodenreider
O*. Clinical Ontologies for
Discovery Applications. pp.101-119 Chritopher
Baker and Kei Cheung, Editors. Semantic Web: Revolutionizing Knowledge
Discovery in the Life Sciences. Springer
Verlag 2007, XXII, 450 p.
39 Lussier YA*,
Younghee Lee Y, Radivojac P, Ofran Y, Punta M, Butte A, Kann M; Session Introduction.
Molecular Bioinformatics for Diseases: Protein Interactions and Phenomics. Pacific Symposium on Biocomputing 13:228-230(2008)
40 Lussier YA*, Crowson
M, chapter on "Natural language
Processing for Database Systems", The
Encyclopaedia of Database Systems, Springer
2009. Özsu, M. Tamer; Liu, Ling (Eds.) 2009,(in press) Approx. 4000 p. ISBN:
978-0-387-49616-0.
41 Lussier YA*, Chen
J, chapter on "Clinical Ontologies", The Encyclopaedia of Database Systems,
Springer 2009 Özsu, M. Tamer; Liu,
Ling (Eds.) 2009, (in press) Approx. 4000 p. ISBN: 978-0-387-49616-0. http://www.springerlink.com/content/v903264116q61u81/fulltext.html
42
Lussier
YA, Lee Y, Radivojac P, Ofran Y, Butte A, and Kann M. Molecular Bioinformatics for
Disease - Session Introduction. Pacific Symposium on Biocomputing
14:464-466(2009)
43
Mendonça E*, Lussier YA*, chapter "The frontiers of cancer phenomics",
book "An 'Omics' perspective of Cancer" , Chapter 11, pp.204-10 Springer, 2009.
44 Butte
AJ, Sarkar IN, Ramoni M, Lussier Y,
Troyanskaya O. Selected proceedings of the First Summit on Translational
Bioinformatics 2008. BMC Bioinformatics.
2009 Feb 5;10 Suppl 2:I1. doi:10.1186/1471-2105-10-S2-I1
45 Lussier
Y, Butte A, Hunter L. Special Issue on Methodologies for Translational
Bioinformatics. Journal of Biomedical
Informatics, 42 (2009) 201-2.
46 Lussier Y, Sarkar IN.
Selected proceedings of the 2009 Summit on Translational Bioinformatics. BMC
Bioinformatics 2009, 10(Suppl 9):I1 (17 September 2009).
47
Lee Y, * Huang Y, Fan H, Wu Y, Li J,
Zhang Q, Hasina R, Arakaki A, Skolnickj J, Lingen M, Weichselbaum R, Xing
HR*, Lussier YA*. Computational Prediction and Thorough Biological Characterization
Uncovers a Tumor Suppressor microRNA and its Regulatory Network. 2010 American
Medical Informatics Association Summit on Translational Bioinformatics.
·
Highlighted
as late breaking news (one of five selected news)
48 Tao
Y, Mendonca EM, Lussier YA*. A "Systematics"
Tool for Medical Terminologies. AMIA
Annu Symp Proc 2003;:1028.
49 Lussier YA*.
Automated Terminological Networks For High Throughput Comparative Biology of
Phenotypes. Interface 2004, Computational
Biology and Bioinformatics, 36th Symposium on the Interface, Baltimore
Marriott Waterfront Hotel, Baltimore, Maryland, May 26-29, 2004.
50 Sarkar
IN, Cantor MN, Bodenreider O, Lussier YA*.
GenesTrace (TM): Biological Knowledge
Discovery via Structured Terminology. MEDINFO 2004, p.1842.San Francisco.
51 Lussier
YA*. Overview
of Clinical Genomics Technology. SS114 Bringing Context and Consistency to the
Genomic Revolution - Creating Visible Man.
Annual Meeting of the College of American Pathologist. Sept. 19-22, 2004,
Phoenix.
52 Patel
C, Lussier YA*. Re-representing
Biomedical Ontologies using the Web Ontology Language - A Checklist. Standards and Ontologies for Functional
Genomics 2. Oct 23, 2004 - Oct 26, 2004, University of Pennsylvania School
of Medicine, Philadelphia, Pennsylvania.
53 Lussier
YA*. Computational
Ontologies for High Throughput Visualization and Analyzes of the Phenome.
Standards and Ontologies For Functional
Genomics 2, Oct 23-26, 2004, University of Pennsylvania School of Medicine,
Philadelphia, Pennsylvania.
54 Lussier
YA*. "Impact of Healthcare Practices and Financing on Clinical
Informatics Applications and Research: A Proposed Predictive Model". International Colloquium. Reflections and
Realities: How Much Impact Has Our Health/Medical Informatics Research Had
On Our Health Care Systems? University of Victoria, June 3-4, 2005.
55 Lussier YA*,
Liu Y, Skolnick J, Gerstein M. Progress of the Biomedical Informatics Core.
Annual Meeting of the Northeast Research
Center of Excellence in Biodefense and Emerging Infectious Diseases. Cold
Spring Harbor Laboratories, 2005/9.
56
Tulipano K, Tao Y, Zanzonico P,
Kolbert K, Lussier YA, Friedman C.
Natural Language Processing in the Molecular Imaging Domain. AMIA Annu Symp Proc 2005;:1143.
57 Lussier YA*, Bodenreider
O*, Kashyap V, Patrick TB, Neumann E, Rector A. Panel: Towards a Semantic Web
For Life Sciences? AMIA Annu Symp Proc
2005.
58
Borlawsky T, Li J, Jalan S, Stern E, Williams R, Lussier YA*. Partitioning Knowledge
Bases between Advanced Notification and Clinical Decision Support Systems. AMIA Annu Symp Proc 2005;:901.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1560494/pdf/amia2005_0901.pdf
59 Lussier YA*,
Li J, Liu Y, Patel C, Hsiao T, Quek HN Computational approaches for genome
scale analyses of phenotypes〞Bridging the phenotypic gap between clinical
repositories and model organism databases. Genome
Informatics 2005. p.89.Fri 10/28 - Tue 11/01 2005. Cold Spring Harbor
Laboratory.
60 Sam
L, Borlawsky T, Rappaport D, Li J, Shagina L, Liu Y, Friedman C, Lussier YA*. Towards a Eukaryotic
Phenome: the PhenoGO Database System. Pac
Symp Biocomput 2006.
61 Tao
Y, Patel C, Friedman C*, Lussier YA*. OWL-based
Interoperation of Clinical and
Genetic Phenotypes anchored with the Phenotypes Attribute Ontology of the GO
Consortium. "Biomedical Ontology in
Action/KR-MED 2006 International Workshop" organized by the National Center for Ontology Research (NCOR), and the American medical
Informatics Association (Biomedical Knowledge Working Group 每Baltimore Nov
8, 2006.
62 Tao
Y, Li J, Friedman C, Lussier YA*.
Predicting New Functions of Human Genes from the Network of Gene Ontology
Annotations. Pac Symp Biocomput 2007.
63 Liu
Y, Li J, Sam L, Goh CS, Gerstein M*,
Lussier YA*. Computational Proteomics: High-throughput Analysis for Systems
Biology. Pac Symp Biocomput 2007.
64 Chen
J, Lussier YA*. Automated functional
classification of Human Disease Genes. Pac
Symp Biocomput 2007.
65
Lussier
YA*, Friedman C*. BiomedLEE: a natural-language processor
for extracting and representing
phenotypes, underlying molecular mechanisms and their relationships. ISMB 2007 (Intelligent Systems for Molecular
Biology).
66
Liu Y, Li J, Sam L, Goh CS, Gerstein
M, Lussier YA*. An integrative
genomic approach to uncover molecular mechanisms of prokaryotic traits'. ISMB
2007 .
67
Liu Y, Li J, Sam L, Lussier YA*. Robust Methods for
Accurate Diagnosis Using Highly Multiplexed Microbiological Arrays. ". ISMB 2007 .
68 Liu
Y, Li J, Sam L, Goh CS, Gerstein M,
Lussier YA*. An Integrative Genomic Approach to Uncover Molecular
Mechanisms of Prokaryotic Metaphenotypes.
1st Midwest Symposium on Computational Biology and
Bioinformatics (MSCBB).
69 Chen
ES, Lussier YA, Borlawsky TA, Qureshi K, Hripcsak G*.
Monitoring the Function and Use of a Clinical Decision Support System. AMIA Annu Symp Proc. 2007 ; :902.
70 Liu
Y, Sam L, Lussier YA*. Robust
Informatics Methods for Accurate Diagnosis Using Highly Multiplexed Virus Arrays,
AMIA Ann Proc. 2007, Oct 11:1039.
71 Sam
L, Borlawsky T, Tao Y, Li J, Friedman C, Smith B, Lussier YA. Information-Theoretic Classification of SNOMED
Improves the Organization of Context-Sensitive Excerpts from Cochrane Reviews
. AMIA Ann Proceed 2007, P.1100.
72 Yang
X, Lussier YA*. Common MicroRNA-mRNA Regulatory Biomodules Predicted in
Human Epithelial Cancers. AMIA 2010
Summit in translational Bioinformatics co-sponsored by ISMB. March 2010,
San Francisco; Track 1, p.26.
73 Chen
J, Lussier YA*. Mechanism-anchored
Prognosis Meta-Signature of Breast Cancer unveiled by Protein Interaction
Networks. AMIA 2010 Summit in
translational Bioinformatics co-sponsored by ISMB, March 2010, San Francisco;
S14, p.18.
74 W.
Zhang, E. Gamazon, R. Huang, University of Chicago; S. Duan, Singapore
Institute for Clinical Sciences; W. Bleibel, M. Welsh, Y. Lussier, M. Dolan. MicroRNA Signatures of Cytotoxicity Unveils
Molecular Underpinnings of Chemotherapeutic Drug Classes. AMIA 2010 Summit in translational Bioinformatics co-sponsored by ISMB,
March 2010, San Francisco; S9,p.16.
75 Y.
Lee, X. Yang, Y. Huang, H Fan, Q. Zhang, Y. Wu, J. Li, R. Hasina, M. Lingen, M.
Gerstein, R. Weichselbaum, H. Rosie Xing, Y.
Lussier*. Network Modeling Identifies Molecular Functions Targeted by
miR-204 to Suppress Head and Neck Tumor Metastasis. AMIA 2010 Summit in translational Bioinformatics co-sponsored by ISMB,
March 2010, San Francisco; S12,p.17.
76 Y.
Lee, X. Yang, Y. Huang, H. Fan, Q. Zhang, Y. Wu, J. Li, R. Hasina, C. Cheng, M.
Lingen, M. Gerstein, R. Weichselbaum, H. Xing, Y. Lussier*. Computational
Phenomics and Thorough Biological Characterization Uncovers a Tumor Suppressor
microRNA and its Regulatory Network. AMIA
2010 Summit in translational Bioinformatics co-sponsored by ISMB, March
2010, San Francisco; S16,p.19.
77 Lussier YA. "Clinical Genomics." Grand Rounds, NYPH
Allen Pavilion. 3/20/2003.
78 Lussier YA. "Clinical Genomics Updates." Grand
Rounds, NYPH Allen Pavilion,
New York. 7/15/2004.
79 Lussier
YA. SNOMED and the Art of Bioinformatics.
SNOMED CT® Implementation Solutions: The Future is Now, 6th Annual SNOMED International Users Group, September 22-24, 2004,
Phoenix.
80 Lussier YA. "Clinical Genomics Technologies,
Updates." Grand Rounds, NYPH
Milstein Hospital, New York.
Nov 2nd 2004.
81 Lussier YA.
Computational Systems Biology and Medicine: Approaches to high throughput and
large scale analyses of phenotypes. Conference
Series of General Internal Medicine of the Dept of Medicine, Columbia
University, 11/05/2005.
82 Lussier YA. "Predicting
the Molecular Underpinnings of Complex Phenotypes with High Throughput
Phenomics". Grand Rounds of
Rheumatology, The University of Chicago, Feb 13 2007.
83 Lussier YA.
"Computational Approaches to Unveiling Novel Protein-Protein Interactions in
Diseases". Emergency Resuscitation Center,
The University of Chicago, Feb 22 2007.
84 Lussier YA.
"High-Throughput Analysis of Novel
Protein-Protein Interactions in Diseases". Breast Cancer Seminar versity of Chicago, A
85 Lussier YA. Genomic
Technologies: clinical challenges and opportunities. . Advanced Topics in Clinical Series, Dept. of Medicine, The University
of Chicago, June 7th 2007.
86 Lussier YA. Proteomic
Technologies: clinical challenges and opportunities. . Advanced Topics in Clinical Series, Dept. of Medicine, The University
of Chicago, June 21th
2007.
87 Lussier YA. Database
Schema for Clinical Genomics. First Genetic Trust, Sept. 2003, New Jersey.
88 Lussier YA.
"Phenotypic Networks and the Art of Bioinformatics" University of
Buffalo Center of Excellence in Bioinformatics. 5/6/2004.
89 Friedman
C, Lussier YA. Biomedical
Informatics Tools for Curators. Jackson
Laboratories, Mouse Genome Informatics, June 29, 2004, Bar Harbor.
90 Lussier YA. Phenomic Program of the Lussier Research
Group.
91 Lussier YA.
"Hypothesis-Driven Computational Methods for Molecular Medicine and Systems
Biology: Genome Scale Integrative Analyses of Phenotypes". School of Health Information Science in The University of Texas Health Science Center at Houston, 6/8/2005.
92 Lussier YA.
"Computational approaches for genome scale analyses of phenotypes: bridging the
phenotypic gap between clinical repositories and model organism databases".
Center for Genetic Medicine and Dept. of Cell and Molecular Biology, Northwestern University Medical School,
Chicago, June 13th 2005.
93 Lussier YA. "Research
Technical Discussions on Ontologies in Biomedicine", Industry Solution
Laboratory,
94 Lussier YA.
"Computational approaches for genome scale analyses of phenotypes: improving
the understanding of biological systems and the diagnosis of diseases"
Department of Pathology, Division of Biological Sciences, University of Chicago, July 12th 2005.
95 Lussier YA. "Systems
Biology approaches to the Metagenomic Analysis of Phenotypes". Department of
Biomedical Informatics, Vanderbilt
University, Nashville, August 11th 2005.
96 Lussier YA. "Bridging
the Phenotype Gap: Ontology-Anchored Computational Methods for Biomedicine".
Knowledge-Based Bioinformatics Workshop Hosted by the Genome Qu谷bec funded project: Ontologies, the semantic web and
intelligent systems for genomics. September 21st - 23rd 2005; Montr谷al, Qu谷bec,
Canada.
97 Lussier YA.
Bio-ontologies and Database Integration. Buffalo-Columbia workshop on ontology
and cancer bioinformatics. New York State
Center of Excellence in Bioinformatics and Life Sciences. Friday, October 14
2005, 280 Park Hall, University at Buffalo.
98 Lussier YA.
"Collecting and Integrating Phenotypic Information from Multiple Databases
for Correlation with Genomic Databases. Toyota
Technological Institute at Chicago, 4/10/2006.
99 Lussier YA. Systems
Properties in a Comprehensive Genomic Networks. Computation Institute,
University of Chicago, July 2006.
100 Kann
M, Ofran Y, Punta M, Radijovac P, Lussier
YA, Panelists. Discussion Session: Protein Interactions in Diseases.
Pacific Symposium in Biocomputing, Jan 4th 2007, Maui.
101 Lussier YA. Phenomic
Data and its Valuation Chain. Computational Biology Seminar, Division of
Molecular and Computational Biology, Dept. Computational Biology &
Bioinformatics, University of Southern California, (invited for March 18th? Xianghong Jasmine Zhou
Michael Waterman
102 Lussier YA. Emerging
Systems Properties in High Throughput Phenomic Studies. Annual CI Fellows meeting,
Computation Institute, University of Chicago, February 21, 2007.
103 Lussier YA. Emerging
Systems Properties in a Comprehensive Genomic Network of Prokaryotic Traits. Mathematics for Systems Biology Seminar
Series: "Emergence in Complex Systems", Computation Institute,
University of Chicago, February 22, 2007.
104 Sam
L, Li J, Liu Y, Friedman C, Lussier YA*.
Predictions of Phenotypic Biomodules in Protein Interaction Networks. Annual meeting of the National Research
Center for Multiscale Analyses of Genomic and Cellular Networks (MAGNET),
Wavehill, NY, April 6, 2007.
105 Lussier YA. Ontology
Similarity Networks and Database Interoperability. Interface 2007, May 23-26, Philadelphia.
106 Lussier Y.
Computational Systems Biology approaches to Elucidating Functional Mechanisms
Underpinning Molecular Profiles of Cancers. AACR
2007, Nov 27th 每Dec 1st, 2007, Atlanta.
107 Lussier YA.
Computational Systems Biology approaches to Elucidating Functional and
Molecular Mechanisms of Diseases. University of Chicago Gastro Enterology
Research Conference, December 6th, 2007.
108 Lussier YA. Resources
for Multiscale Analysis of Cellular Networks and ECM. National Center for Biomedical Ontology. Cellular Networks
Workshop. Newark, NJ, March 28th, 2008.
109 Lussier YA.
Protein Interaction and Diseases, a year＊s review. The University of Chicago CTSA Biological
Translational Research Workshops Presentation. March 31st 2008.
110 Lussier YA. Predictions
of Phenotypic Biomodules in Protein Interaction Networks. Annual meeting of the National Research Center for Multiscale Analyses
of Genomic and Cellular Networks (MAGNET), Wavehill, NY, April 6, 2007.
111 Lussier YA. Clinical
Monitoring: Ontology-Anchored, NLP-Enabled, User-Directed Pharmacovigilence.
Conference on Semantics in Healthcare & Life Sciences (C-SHALS, an official
conference of the International Society
for Computational Biology), March 5-7 2008, Boston.
112 Lussier YA. Networks, Protein Interactions and
Diseases. Center for Computational Biology & Bioinformatics. Indiana University School of Medicine.
April 14th, 2008, Indianapolis, IN.
113 Lussier YA. Systems Biology of microRNAs in Cancer: A
case study of Biomolecular Networks and Functional Modules. City of Hope Cancer
Center, June 2008
114 Lussier YA. Decision Making and Individualized
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